<h2>Overview:</h2>
<p>The Public scRNA-Seq Datasets repository is used to construct scater objects and reports from various publicly available scRNA-Seq datasets. The pipeline is built using docker containers and cloud computing, resulting in a website where the data and annotations can be accessed.</p>
<h2>Features:</h2>
<ul>
<li><strong>Automated Reports</strong>: Generate reports in a continuous integration manner.</li>
<li><strong>Docker Containers</strong>: Implement the pipeline using docker containers for easy deployment.</li>
<li><strong>Cloud Computing</strong>: Utilize cloud computing resources for data processing and analysis.</li>
<li><strong>Website Generation</strong>: Build a website using the MkDocs generator to present the data and annotations.</li>
<li><strong>S3 Storage Integration</strong>: Ability to list files and upload data to S3 storage.</li>
<li><strong>Instance Setup Guides</strong>: Detailed guides on setting up instances on AWS and OpenStack.</li>
<li><strong>Jenkins Integration</strong>: Install Jenkins for automation and easily run docker images.</li>
<li><strong>Data Security</strong>: Secure access to instances and permissions for running Docker and uploading data.</li>
</ul>


Hemberg Lab

ScRNA.seq.datasets